Can i take target protein which have E-value worse than threshold for modelling?

More Sangita Dixit's questions See All

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Is it necessary, for modelling, only similar organism or similar function protein will be take for target prediction ?

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Mohamed AbdElAziz Khamis Omar

https://academic.oup.com/bioinformatics/article/23/15/1901/202515

https://www.researchgate.net/post/What_is_E-value_exactly_means_and_what_is_it_1e-63_representing

Article Identification of correct regions in protein models using st...

Article A Multi-Template Combination Algorithm for Protein Comparati...

https://www.nature.com/articles/s41598-018-21849-1

Rajesh Pal

Hi sangita, While modelling a protein we generally look at the sequence identity. E value doesn't give you clear idea about the sequence, specially in case of shorter templates.

The threshold for the sequence identity is 50% more or less. Anything below that will give you a bad model.