Sangita Dixit

4 Questions 3 Answers 0 Followers

Questions related from Sangita Dixit

Anyone can suggest best protein peptide docking server/tools/ for binding energy calculation?

I possess 250 peptides and one target protein, prompting my search for tools/servers that allow docking of multiple peptides simultaneously. While I have already utilized HPPdock, I am interested...

16 May 2023 9,765 2 View

Is it necessary, for modelling, only similar organism or similar function protein will be take for target prediction ?

I have a template i.e. transcription factors protein my aim is to predict 3D structure of that protein. I am using PSI-BLAST for target search, but in PSI-BLAST, similarity is showing...

07 August 2018 7,770 1 View

Can i take target protein which have E-value worse than threshold for modelling?

In PSI-BLAST result, i found a target sequence which have e-value 1.8. Can i take this protein as my template protein target for homology modelling?

07 August 2018 9,606 2 View

Can i use PSI-BLAST for template selection of Homlogy Modelling instated of BLASTP ?

I have a 265 long aa sequence and my aim is to design a 3D structure of this sequence.In BLASTP, sequence showing 26% query cover and 81% ident. I tried modeller9.20, I-TASSER, Phyre2,...

04 August 2018 7,624 2 View