Hello, I am trying to run Proteome Discoverer (PD) software on cluster and would like to know if there is a way to run PD with Linux command line. Thank you for your help in advance!
Best regards,
Hello Ali, I presume that you have installed Proteome Discoverer (PD) on Linux using Wine, PlayOnLinux or any Virtual Machine and that your question is not whether or not you can run PD on Linux. Regarding using command line it depends on PD, not operating system. That is, if PD run with Windows command line then it will also be possible to do it on Linux, but you will have to find a way to launch the shell (or CMD on Windows) from Wine or PlayOnLinux, not directly from Linux. For example, you can invoke cmd in a Linux terminal/console (by using 'wine cmd'), and writing the necessary commands as on Windows. I hope it helps or can guide you in your search.
Best regards
Juan Antonio García-Armenteros I really appreciate for your suggestions, I will check if it is possible to run PD from command line and find a way to run cmd on Windows from linux terminal.
Regards,
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