We obtained sequences of IBD virus and want to align them with published similar sequences. Sometimes only complete sequences available for a particular isolate in Genbank while I need only VP2 sequences to compare.
I am writing an article about a molecular survey on viral poultry diseases. I want to compare several sequences belonging to the same virus but different in pathogenicity and at molecular level so...
09 October 2013 4,432 9 View
I'm trying to do a multiple alignment of coding sequences for a protein I'm interested in, using Mega 5.05. Following the advice in Barry Hall's book, I'm trying to align the sequences using...
09 October 2013 9,245 0 View
We did a molecular survey and want to find out the similarity and identity among the amino acid sequences, so that we can interpret our sequence data.
09 October 2013 8,132 23 View
I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...
05 August 2024 6,787 4 View
I am looking for software to help analyze SELEX NGS data, including alignment, sequence enrichment, and other related tasks. Can anyone recommend suitable tools or software? Best wishes, Waleed
30 July 2024 1,061 5 View
PeptiCloud (www.pepticloud.com) is a bioinformatic platform that allows researchers to organize and share their data for their projects as well as collaborate with others in one place. Through...
28 July 2024 4,762 2 View
Hi all. As a beginner in ChIP-seq experiments, I hope you understand that the following questions might be somewhat basic. I am planning to perform ChIP-seq or MeDIP-seq analysis to investigate...
28 July 2024 6,938 1 View
Hi! I am currently working on a protein where I have selected residues within 10A of its bound ligand in pymol. However, I can not find a way to print out what residues are contained in that group...
15 July 2024 1,727 1 View
Silver Nanoparticles docking with alpha amylase and alpha glusidase .
11 July 2024 6,883 2 View
I am working on a paper for my bioinformatics class, where we are running an analysis of transcriptomics on A. thaliana col-0 about the difference in gene expression in the temperatures of 21 and...
12 June 2024 8,822 1 View
Hi, I am very new to Bioinformatics. Recently, I have the project that aims to perform taxonomic anlysis on raw reads from mixed samples taken from environment. For example, we perfromed NGS...
09 June 2024 6,537 3 View
Hi.. I am currently trying to look for an enzyme in a stingless bee proteome. However the query of known enzymes of the similar function is mainly from microorganisms - yeast and bacteria. I have...
03 June 2024 9,983 3 View
Constant touchstones following the protocol introduces a new dimension of bioethics to the bioinformatics about big ideas, modes of inquiry, intellectual traits and habits of mins but it is...
24 April 2024 8,739 3 View