Can anyone recommend a software for codon usage analysis?

Maryam Tahmasebi Birgani @Maryam-Tahmasebi-Birgani

18 August 2015 1 6K Report

dear friends

who works on codon usage and its association with transcription and splicing ? i need to know a valid software for such analysis

thanks in advance

Guy Bottu

The EMBOSS package (http://emboss.sourceforge.net) contains some programs to create a codon usage table from coding nucleic acid sequences, as well as to compute some statistics from codon usage tables.

Badges
Science topic

More Maryam Tahmasebi Birgani's questions See All

Leaf area of tomato ?

Hi How can this equation Ln(LA) = 1.038 + 0.89 ln(X) be applied to calculate the leaf area of a tomato? Can you explain with an example and what is the substitution of Ln and ln?

06 August 2024 2,508 2 View

Standard curve of H2O2?

Hi, I need to prepare a standard curve of H2O2 to evaluate the primary products of oxidation. H2O2 I have is 35%. How do I prepare a stock of H2O2 10 microlitere. If s.o has experience, I would be...

26 July 2024 3,460 2 View

How to do FEL analysis?

In molecular dynamics simulation, to get FEL analysis, I got an error. My Python version is 3.10.7. My input files are made with a lower version of Python. But the final command to generate the...

23 July 2024 5,646 2 View

Systematic review meta-analysis paper?

Hi everybody, We are trying to write a systematic review meta-analysis paper. But I could find 19 references. I think 19 references are not enough to do a meta-analysis section and it is better to...

10 July 2024 5,490 5 View

Cut PDMS sheet with Graphtec cutter plotter CE6000-40?

Dear All, I want to cut PDMS sheet with thickness of 0.8 mm to rectangular shape with Graphtec cutter plotter CE6000-40. What condition do you offer? Do you offer any kind of special speed or force?

25 June 2024 8,111 1 View

Who can recommend where to buy Flow Cells for Illumina HiSeq 2500?

I recently acquired a used Illumina HiSeq 2500 and am in need of flow cells compatible with this machine. As I am relatively new to this aspect, I would greatly appreciate any recommendations on...

22 June 2024 5,992 1 View

Ultrasonic degradation of Pectin?

Dear researchers, Greetings. We have subjected pectin solution to ultrasound to produce oligosaccharides. Initially, as the ultrasound time was increased, the molecular weight decreased....

13 June 2024 881 3 View

Why not enough quality and quantity in DNA extraction gel electrophoresis?Extraction?

Hello every body I use CTAB method for Plant DNA extraction and I need DNA for downstream steps. Unfortunately I have problem in my plant DNA extraction, quality and quantity not as expected, and...

10 June 2024 6,610 2 View

Animal feed probiotic bacteria market?

I would be pleased if you could share the report "Animal feed probiotic bacteria market for aquatic animals, BY REGION, 2022-2032" with me.

03 June 2024 255 5 View

Hello, I have a question about the interpro,how's it works?

I'm a student in zanjan university and I'm writing a proposal but I need quick help. thanks for your help.

02 June 2024 8,950 1 View

GC-MS retention index prediticon?

Hello experts, Does anyone know any free software about retention index prediction ?

08 August 2024 7,403 2 View

Can anyone provide me with molecular docking softwares/ websites?

Molecular docking software/ websites?

02 August 2024 8,704 7 View

I am working on my Master's thesis on the biogeography of the genus Ruagea and I would like to ask, could someone help me to check whether my result?

I created a file with my outgroup and ingroup species using Beauti, ran it in BEAST, viewed it in Tracer, and then used TreeAnnotator to create a file that I imported into RASP. Could someone...

28 July 2024 2,979 1 View

Which software tools are best for enhancing diagnostic accuracy in chest X-ray imaging using image reconstruction and neural networks?

I am reaching out to seek your valuable advice and recommendations regarding the best software tools to use for this research. Specifically, I am looking for software with a user-friendly...

22 July 2024 3,794 1 View

How to test multivariate outlier in STATA?

Hey all, I need help testing for multivariate outliers using STATA for my master thesis. The literature recommends the Minimum Covariance Determinant (MCD) (Verardi & Dehon, 2010). I found the...

22 July 2024 8,821 2 View

MDCI module in Orca software?

Dear Researchers, My question is associated with the "MDCI" method in Orca. Please let me clarify my question using a simple example: Suppose we are going to perform CBS extrapolation using "!...

21 July 2024 1,632 0 View

What is wrong with my input file?

im studing gaussian 16 with reading paper about I-131 Metaiodobenzylguanidine in the paper "In a similar vein, nuclear magnetic resonance shielding values were investigated using the widely...

16 July 2024 6,040 4 View

Figure plot in scientific articles?

Hi all, Do you know how to plot this figure? I found many of them in Nature journals but have not figured out how to make them. Which software/tool do you suggest? Thank you very much.

15 July 2024 8,384 2 View

Can it is possible to find the cleaved sequence when a protein cleaved by a heamaglutanin protease (HA/P) by any bioinformatics tools?

Bioinformatics tools like peptide cutter

15 July 2024 6,453 1 View

What is the difference between OTU and ASV analysis?

For microbiome data analysis

13 July 2024 4,542 2 View