Can anyone recommend a good mouse transcriptome database that is organized based on tissue? I am looking to find a list of protein coding mRNAs detected in whole blood.
You can use RefEx, MGI. Here are the links :
RefEx :
https://refex.dbcls.jp/index.php?lang=en&db=mouse
MGI :
http://www.informatics.jax.org/expression.shtml
BioGPS :
http://amp.pharm.mssm.edu/Harmonizome/dataset/BioGPS+Mouse+Cell+Type+and+Tissue+Gene+Expression+Profiles
I didn't use it myself. But this one seems to be good:
https://tabula-muris-senis.ds.czbiohub.org/
It is a single-cell transcriptomic atlas that includes data from 23 tissues and organs across the lifespan of the Mus Musculus.
Here is the link to the paper: https://www.nature.com/articles/s41586-020-2496-1
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