Does anyone know any online database which has all organisms classified based on whether they are intracellular or extracellular organisms?

I need to carry out classification of some bacterial pathogens based on whether they are extra- or intra- cellular.

06 July 2016 3,296 4 View

Is the term 'time to the most recent common ancestor' the same as 'time of the most recent common ancestor'? Can they be used interchangeably?

I was just wondering if both refer to the same concept and can be used interchangeably.

09 October 2015 6,458 0 View

What does the 't' or 'T' stand for in 'tMCRA' or 'TMRCA'? Do they represent the same thing?

09 October 2015 8,750 0 View

How can we achieve better peace and security in the world?

What are some of the innovative and practical ways the world as whole can achieve peace and security aside the steps the UN has undertaken over the past years after the second world war? It seems...

01 February 2015 8,895 2 View

How do I get the age range (95% HPD) displayed at each node of an MCC tree in Figtree?

I have a maximum clade credibility tree drawn and I am trying to get the age range at each node but I don't seem to get it right. How do I get that? I have the node bars displayed but I need the...

11 December 2014 4,748 8 View

Can anyone suggest any other software apart from MEGA6 which I can use to draw a maximum likelihood tree?

The process is slow in MEGA so I was wondering if there is a software that is faster.

07 August 2014 9,896 5 View

Does anyone have an idea about how I can determine whether a gene reassortment event occured in the recent or distant past?

I want to be able to tell when a gene reassortment event (observed after DNA sequencing of genes of pathogens) occured.

05 June 2014 4,437 2 View

What is the simplest, user friendly but very reliable gene recombination detection software?

I need to determine whether any recombination events have occurred in genes I have sequenced.

05 June 2014 2,600 2 View

How can I get more than 100 hits when I do a nucleotide BLAST at the NCBI website?

I need to retrieve about 1000 hits from the GenBank to use for my analysis.

05 June 2014 6,622 4 View

How reliable is the MAFFT online sequence multiple alignment program?

I have lots of sequences to align and I used to use MEGA6 but it takes forever to finish one multiple alignment session. I need a faster and a more accurate way of obtaining my multiple alignments.

05 June 2014 7,955 6 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...

03 March 2021 5,978 5 View

How to repeat an operation on an atom selection for multiple times in PyMol?

Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...

02 March 2021 4,569 4 View

Does anyone know HRM channel in a 2 plex QIAGEN Rotor- Gene Q qPCR can be used as a separate channel?

I am going to have 3 different probes in my qPCR work that I am going to do. But I realized that the machine we have in the lab is a Rotor-Gene Q 2plex HRM Platform, saying it has green, yellow,...

01 March 2021 8,544 1 View

In Molecular Dynamics Simulation, how do I make changes to the force field according to my protein?

Hi In Molecular Dynamics Simulation, how do I make changes to the force field according to my protein? I got this error in the add-ion stage: Fatal error "./ amber99sb-ildn-HHH.ff / force...

01 March 2021 8,747 4 View