How do you specify two different channels for a TMT 6 plex experiment in Maxquant?
For example, 3 samples wild-type, 3 samples Fbw7 Knock Out were labeled by 6plex TMT - labels126,127,128 - wildtype; 129,130,131 - Fbw7 KO. In Maxquant under Type, we select, 'reporter ion MS2'...
17 September 2020
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