Bioinformatic tools for protein role in molecular signaling pathways ?

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Are there any tools to display A,T,G,C percentage in gene sequnce?

I have a list of 1000 genes and I need to see the percentage of C and G in their DNA sequences. I have no sequences, just their IDs. Are there any tools that would calculate C and G percentage of...

08 September 2018 325 5 View

Who studies drug induced gene expression in Germany?

Currently I look for a lab in Germany that studies drug (opioid, hallucinogen, stimulant, antidepressant etc.) induced gene expression in neurons . Maybe there are labs in Berlin?

08 September 2018 6,156 1 View

Code for plotting heatmap or 3D surface graph with R studio ?

Currently I am trying to plot a heatmap or 3D surface plot, that represents relationship between 3 variables. I am new to R studio so I keep struggling with my code. Therefore my questions...

04 May 2018 5,012 1 View

What are the databases of microRNA targets and transcription factor targets?

I'm looking for two types of the databases: 1) One that contains the data about microRNA (miRNA) targets. 2) One that contains the data about transcription factor targets. Are there any of these...

03 April 2018 8,250 3 View

How to repeat an operation on an atom selection for multiple times in PyMol?

Hi, I am trying to construct a multi-layer fibril structure from a single layer in PyMol by translating the layer along the fibril axis. For now, I am able to use the Translate command in PyMol...

02 March 2021 4,569 4 View

How to calculate average trend in maximum annual NDVI from MODIS?

I am wanting to calculate the average trend in maximum annual NDVI in Iceland from 2010-2020 using MODIS MYD13Q1 V6. How would I do this? I have currently inserted the NDVI bands from the MODIS...

02 March 2021 752 2 View

Why does two different bioinformatics tools for the same proteins show different subcellular localizations?

During a computational analysis, I found that for a protein of a plant, two different subcellular localizations are seen using CELLO and WoLF PSORT. For example, in CELLO, it identified the...

01 March 2021 6,729 2 View

What is the most suitable server for predicting protein structures in bacteria?

I have used the i-Tasser several times, however it has been unavailable for several days. I tried the swiss-model, but the output was not very pleasant due to the model used. Is there any other...

28 February 2021 4,521 3 View

What is the difference between genotype and haplotype data in the ped format?

Hi everybody In the ped format for genotype, alleles of any SNP are represented by two columns (one for each allele, separated by a space). Is a column sufficient for the haplotype to...

27 February 2021 1,965 1 View

I have need of XRD graph analysis software for phase identification. Can you please provide links for software tools which can be downloaded?

i am trying to download x'pert high score software, but can't download it. please do suggest software for phase analysis

24 February 2021 5,687 4 View

Please suggest me the simplest way to understand the in-silico analysis of any gene?

I want to understand the basics of docking, and also know about all bioinformatics tools which are free of coast and helpfull in in-silico analysis?

22 February 2021 8,879 2 View

Is there a Constitutive model for concrete with Sea-Sand?

Hi I am running a simulation in Abaqus for a concrete beam. Its fine aggregate replaced with sea-sand. I was wondering if I could find studies that measured the ultimate strain of concrete made...

22 February 2021 6,409 2 View

How to visualise pathways from a phosphoproteomics dataset?

I am looking for something similar than Ingenuity Pathway Analysis (IPA) in which I can enter the proteins differentially phosphorylated and I can visualise the pathways these proteins are...

21 February 2021 8,923 4 View

How can we measure the reliability and validity of our survey questionnaire?

We are conducting survey research on COVID-19 misinformation among students. How can we validate our survey for it to produce valid and reliable data? Also, what statistical tools can we use to...

16 February 2021 678 3 View