Bioinformatic tools for protein role in molecular signaling pathways ?

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Are there any tools to display A,T,G,C percentage in gene sequnce?

I have a list of 1000 genes and I need to see the percentage of C and G in their DNA sequences. I have no sequences, just their IDs. Are there any tools that would calculate C and G percentage of...

08 September 2018 437 5 View

Who studies drug induced gene expression in Germany?

Currently I look for a lab in Germany that studies drug (opioid, hallucinogen, stimulant, antidepressant etc.) induced gene expression in neurons . Maybe there are labs in Berlin?

08 September 2018 6,256 1 View

Code for plotting heatmap or 3D surface graph with R studio ?

Currently I am trying to plot a heatmap or 3D surface plot, that represents relationship between 3 variables. I am new to R studio so I keep struggling with my code. Therefore my questions...

04 May 2018 5,120 1 View

What are the databases of microRNA targets and transcription factor targets?

I'm looking for two types of the databases: 1) One that contains the data about microRNA (miRNA) targets. 2) One that contains the data about transcription factor targets. Are there any of these...

03 April 2018 8,342 3 View

How to select relevant metabolites from multiple annotations ?

I am using the Polyomics Integrated Metabolomics Pipeline (PiMP) for metabolite feature analysis. After annotating my data, I have encountered cases where multiple potential metabolites are...

24 July 2024 5,789 0 View

Which software tools are best for enhancing diagnostic accuracy in chest X-ray imaging using image reconstruction and neural networks?

I am reaching out to seek your valuable advice and recommendations regarding the best software tools to use for this research. Specifically, I am looking for software with a user-friendly...

22 July 2024 3,794 1 View

I want to conduct a research using quasi experimental design to test two treatment and one control what type of statistical tools do l use ?

What type of experimental design do l use and what statistical tools do l use for the hypothesis. What is the position of control group in the analysis?. Thanks

18 July 2024 3,581 3 View

What will be the best way to test NFkb activation via western blot?

Hi, I have lysate from human macrophages, and I wonder what will be the best way to check the NFKB activation in those cells. I was thinking p-p65 or p-ikkb./ Is that make sense?

18 July 2024 5,214 4 View

Which research tool for expert validation for our study?

I am a 3rd year Computer Science student currently writing our Bachelor's thesis about finding diverse k-shortest paths in pedestrian networks. We have chosen 3 local areas as our proposed...

15 July 2024 4,289 0 View

Figure plot in scientific articles?

Hi all, Do you know how to plot this figure? I found many of them in Nature journals but have not figured out how to make them. Which software/tool do you suggest? Thank you very much.

15 July 2024 8,384 2 View

Can it is possible to find the cleaved sequence when a protein cleaved by a heamaglutanin protease (HA/P) by any bioinformatics tools?

Bioinformatics tools like peptide cutter

15 July 2024 6,453 1 View

What is the difference between OTU and ASV analysis?

For microbiome data analysis

13 July 2024 4,542 2 View

Does anyone know how to improve calcium-imaging fluorescence with GRIN lenses?

Hey everyone, I've been working with GRIN lenses (Inscopix) for almost 1 year and still had no luck seeing strong fluorescence on them. When I look at them, I can see good blood flow and,...

08 July 2024 5,178 2 View

How to predict Shine-Dalgarno sequence ?

Hello, I am Master student under molecular biology. I want to find the Shine-Dalgarno sequence after performing a BLAST search in TargetRNA2. Could you please suggest a web tool to predict the...

07 July 2024 9,598 1 View