BALB/c mice reference genome?

More Pavla Pavlik's questions See All

How to add gene annotation into FIMO output files?

I searched DNA motif in whole genome using FIMO and now I would like to add gene names into the table with founded regions containing my DNA motif. Can anyone help?

10 February 2023 9,069 1 View

How do you find suitable journal or special issues?

Dear colleagues, How do you look for a suitable journal for your manuscript? How do you look for special issues? You contact the editors in advance because it takes many hours to prepare...

24 May 2021 9,128 3 View

What software do you use for qualitative content analysis of articles (for free)?

Do you use for your qualitative analysis software Diction, QSR...?

13 April 2021 8,128 4 View

How to synthesize pure Bronsted acid sites zeolite?

Does anybody have experience with the synthesis of purely or mostly Bronsted acid site zeolite? I would like to prepare a zeolite containing mainly Bronsted acid sites and then the same one with...

11 March 2018 7,850 8 View

Could methanol in formaldehyde influence on crosslink efficiency?

Is it better to use methanol-free formaldehyde for DNA-protein crosslink?

13 November 2017 3,886 4 View

DNA shearing by french press?

Is it possible to shear DNA by french press to get fragment size about 500 bp?

08 October 2017 1,150 12 View

ChIP-seq with DNase?

Hi, could you give me an advice about chromatin immunoprecipitation in bacteria? Is it possible to use DNase for removal nonbinding part of DNA? I mean this: protein will be bind on part of...

26 September 2017 6,906 2 View

Prediction tool for DNA-binding site?

Hi, could you recommended me any prediction software for DNA-binding sites of my protein? I have protein with predict structure using Psipred (pdb file) and fasta file with genome. I would like to...

26 July 2017 7,312 3 View

What experiences with Primocin do you have?

Hi everybody, I'm treating my contaminated cell cultures by primocin. What experiences do you have? What is the optimal length of treatment to obtain healthy cell culture? Do you use primocin all...

15 May 2017 1,547 2 View

Denaturing PAGE of DNA - how to get sharp bands?

Our research group has recetly bought CBS Scientific Adjustable Sequencing Kit (SG-400-20) and we are facing troubles with our electrophoretic separations because we are unable to obtain sharp...

26 February 2017 4,318 3 View

How to learn more about SPSS and its Application?

I would like to learn more about SPSS and Its application especially in regards to data analysis. Please suggest me how I can learn more about it. Thank you so much.

11 August 2024 9,101 4 View

Is there a problem with my RNA pellet?

Hello, I am currently having problems with RNA extraction. I am using mouse liver (C57BL6J), and I have extracted RNA from mouse liver before. Before this experiment, my final RNA pellets were...

11 August 2024 7,082 3 View

Can I base on reverse DNA sequences to perform alignment, convert to amino acids and GenBank submission?

I have reverse sequences (AB1 format), can I base on reverse DNA sequences to perform nucleotide alignment, convert nucleotides to amino acids and deposit the sequence in GenBank database?

11 August 2024 5,138 1 View

Baseline drift in HPLC? What causes this?

Hello, Why do i see this baseline drift when i compare my blank (black) to the sample (blue)? Any suggestions as to why this happened? Thank you!

11 August 2024 3,770 4 View

Text-Communication from the M1 Hand Area using BCI—and then there is Elon Musk?

Willett, Shenoy et al. (2021) have developed a brain computer interface (BCI) that used neural signal collected from the hand area of the motor cortex (area M1) of a paralyzed patient. The...

10 August 2024 7,180 0 View

Handling Missing Data and Building a Predictive Model with Incomplete Information ?

I am developing a predictive model for a water supply network that involves 20 influencing points. However, I only have historical data for 10 out of these 20 points. I would like to know how to...

10 August 2024 4,005 2 View

Has anyone applied Python in the field of textile engineering for data analysis, automation, or smart textiles?

I'm currently exploring the application of Python in textile engineering, specifically in areas like data analysis, process automation, and the development of smart textiles. I'm interested in...

10 August 2024 7,429 2 View

How can I use the cif data obtained from rietveld refinement extracted via gsas2, for microstructural analysis using ETEX software?

09 August 2024 7,718 0 View

Mouse CD3 antibody sequence?

Can anyone share any reference that gives mouse specific CD3 antibody sequence. I have been searching for this since few days and no luck. Thank you very much

08 August 2024 9,157 4 View

How to confirm the site-directed mutagenesis result without performing NGS?

I'm cloning a fragment of 3200 nts into plasmid. The cloning was successful, however, 02 amino acids were mutated. Now I want to fix these 02 aa by site-directed mutagenesis technique using...

08 August 2024 4,645 2 View

Sureshkumar v.

Pavla Pavlik

https://www.sanger.ac.uk/science/data/mouse-genomes-project

https://asia.ensembl.org/Mus_musculus/Info/Strains

Check this sites.

Sophie Sneddon

It is not recommended at all. There are differences in the genomes that would give you false positive results.

https://www.ebi.ac.uk/ena/data/view/GCA_001632525.1

The above is the page for the Ensembl BALB/c assembly, you can use the links at the top to download as fasta.

Thank you very much :-)