Pavla Pavlik

6 Questions 5 Answers 0 Followers

Questions related from Pavla Pavlik

How to add gene annotation into FIMO output files?

I searched DNA motif in whole genome using FIMO and now I would like to add gene names into the table with founded regions containing my DNA motif. Can anyone help?

11 February 2023 9,099 1 View

Verification of ChIPseq data?

Could you recomended me any experiment how to verify results from ChIPseq? (Except the qPCR, PCR, and ChIP-chip) Thank you.

11 July 2019 5,179 3 View

Could methanol in formaldehyde influence on crosslink efficiency?

Is it better to use methanol-free formaldehyde for DNA-protein crosslink?

14 November 2017 3,918 4 View

ChIP-seq with DNase?

Hi, could you give me an advice about chromatin immunoprecipitation in bacteria? Is it possible to use DNase for removal nonbinding part of DNA? I mean this: protein will be bind on part of...

27 September 2017 6,940 2 View

Any advice for the right choice protein tags for ChIP in bacteria?

I am looking for some protein tags for 9 kDa protein in gram-negative bacteria. Do you mind that Tag-ChIP-IT® is appropriate for bacterial ChIP or woudn´t it be better to use FLAG or 3xFLAG and...

24 May 2016 1,014 1 View

BALB/c mice reference genome?

Hi, could someone help me? Is it possible to use C57BL/6J strain (black) reference genome for BALB/c strain sequence data analysis? Or could you recomended me any link for right reference genome...

01 January 1970 533 3 View