I have used GO based tools ( DAVID, PANTHER etc.) and can use GSEA, but have absolutely no idea of any programming language ( including R). Please suggest on how and where I should start ( books, tutorial videos etc. ).
Links provided by Safa will be useful.
learn basics froms
datacamp.com
Use oligo package for Data Normalization
And
Use Limma package for Linear modeling
use below link to learn
https://wiki.bits.vib.be/index.php/Analyze_your_own_microarray_data_in_R/Bioconductor#Using_a_method_from_a_specific_package
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