Arlequin program for population genetic calculations?

30 November 2024 0 9K Report

I am running the Arlequin program for population genetic calculations. Although the program runs correctly, I cannot visualize the output of frequency calculations that generally must be produced in XML, or I am missing it. The output .ars that I get just under my .arp file does not contain the calculation results but only general data about the computation programs. Can anyone help me resolve this problem?

Badges
Science topic

More Genc Sulcebe's questions See All

Which molecular dynamic simulation is better, especially refinement of quaternary protein structure?

I will use molecular dynamics simulation for the refinement of more than two protein structures. Most of the research for refinement in the literature is about the docking of two proteins. So I...

23 March 2021 6,109 3 View

Missing Mn-3d projwfc data, excess charge and floating occupation number in vanderbilt pp in quantum espresso?

Hi all, I am doing some preliminary calculations on quantum espresso about TMN4 structures on defective graphene layer (26 carbon, 4 nitrogen, 1 transition metal atom). While geometric features...

10 May 2020 7,043 0 View

Anybody use CTD-Diver?

If you are using CTD-Diver, can you tell me which brand and what are the advantages and disadvantages of your equipment?

07 July 2019 9,828 0 View

Does anyone know the survival rate and duration of Mediterranean mussel between 30 and 40 m depth?

Does anyone know the survival rate and duration of Mytilus galloprovincialis between 30 and 40 m depths?

22 March 2018 6,728 4 View

What is the most up to date cognitive related lifestyle questionnaire targeting adult >65 years old ?

Lifestyle and cognition are very much conected ,what would be the most up to date questionnaire taking in consideration all the factors involved

23 February 2018 5,291 3 View

How to perform correctly a population study ?

Epidemiology population study methods of inquiry the proper number to be statistically important etc

28 October 2017 7,196 8 View

When to start anticoagulants in acute stroke from AF with hemorrhagic transformation?

Starting anticoagulants after FA related acute ishemik stroke with transforming hemorrhage

03 September 2017 3,307 4 View

What is the approach for recurrent previously irradiated spinal anaplastic ependymoma?

Read 6 answers by scientists to the question asked by Dildar Bahar Genc on Nov 24, 2015

23 November 2015 8,064 6 View

What are the possible categorisations for CSR communication?

I need to categorise the information on CSR reports and I am following several models which recommend different types of categorisation. What are the fields that a CSR report should contain and...

24 September 2015 8,803 5 View

V. “European Congress on Economic Issues is scheduled to be held from 25-27 April 2019 in Baku/ Azerbaijan.

V. “European Congress on Economic Issues is scheduled to be held from 25-27 April 2019 in Baku/ Azerbaijan. This year congress will focus on the question of “GLOBAL ECONOMIC TRENDS” The papers...

01 January 1970 3,246 0 View

AMOVA-FST values calculation?

Hi, I want to perform AMOVA and calculate FST values of 2 population. i cannot understand the format of input files of genoptypic data in Arlequin software. Could anyone help me? If anyone...

07 November 2023 4,134 2 View

Haplotype diversity in popart vs Arlequin?

Hi, I'm looking at genetic diversity from full mitochondrial genomes from 96 different sequences. While building the haplotype network in popart, it shows 6 sequences with identical mitogenomes....

25 June 2023 3,987 1 View

How can i convert my excel or .txt file into an Arlequin file format ?

how can i convert my excel or .txt file into an Arlequin file format ?

19 May 2023 1,749 0 View

Are the p-values output by Arlequin ver. 3.5.2.2 corrected for multiple comparisons?

Are the p-values output by Arlequin ver. 3.5.2.2 corrected for multiple comparisons? For example, a matrix of a pair of FST values. I could not find out by reading the manual. Thank you in advance.

13 December 2022 5,402 0 View

Problem with shared haplotypes in PopArt and Arlequin?

Hi all, I'm analyzing the same dataset in PopArt, to create haplotype networks, and Arlequin for some statistics. My sequences contain missin data and indels and I left them there. When I look to...

16 November 2022 1,794 2 View

Error in Arlequin while running AMOVA and Fst?

I am trying to run AMOVA and Fst using Arlequin with a aligned FASTA. I generated output.arp file using Rstudio and then uploaded as a project on Arlequin, however, my output file (output.xml)...

27 October 2022 7,273 1 View

Why won't Arlequin produce graphs?

I have linked Arlequin to rcmd, and even downgraded my version of R to 3.0.1, however the rmcd button results in the black panel flashing for a second or two and no produced images in the Graphics...

23 July 2022 5,967 1 View

Getting Consistent Issue With Arlequin Mantel Test: Formatting Issue?

Pardon the file names. I was having what might be called a Bad Day. Anyway, whenever I try to run this file and perform a Mantel Test I get the following error: Error while checking matrices,...

19 June 2022 4,305 0 View

Is it possible to set up an Arlequin input file for autosomal STR allele frequency data from multiple loci for multiple populations?

I am working on a population statistics project and have autosomal STR allele frequencies for 10 loci for 29 populations and was trying to figure out how the Arlequin input file had to be...

13 April 2022 2,318 2 View

How can I use ntsys Excel input file of issr in arlequine?

ISSR Binary scoring 1,0 has been done as for NTsys, So, can I use same scoring in arlequin to calculate AMOVA. I have an example of input file but I think scoring is somewhat different I couldn't...

11 February 2022 7,370 1 View