Are there any Wikipathway Gene sets for GSEA annotated with gene symbols?

28 January 2015 1 6K Report

Does anybody know if there is a .gmt gene set file of wikipathway gene sets that is annotated with Gene symbols, to perform GSEA or GSEA-projection at the GenePattern server. The gmt file available is annotated with Entrez gene IDs.

Is there any converter available?

Thanks in advance

Stephan

Marc Muller

You can try DAVID for conversion (http://david.abcc.ncifcrf.gov)

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