Hi,
I am facing following issue at the time of running of Autodock 4.2 even after completing the all the steps properly. Its common for even different protein which were tried to dock with compound. It is a request, anyone can guide me for solving the issue.
Python 2.5.6 (r256:88840, Nov 6 2012, 15:29:26)
[GCC 4.1.2 20061115 (prerelease) (Debian 4.1.1-21)] on linux2
Type "copyright", "credits" or "license()" for more information.
****************************************************************
Personal firewall software may warn about the connection IDLE
makes to its subprocess using this computer's internal loopback
interface. This connection is not visible on any external
interface and no data is sent to or received from the Internet.
****************************************************************
IDLE 1.2.6 ==== No Subprocess ====
>>> Amy2qv4:A:HIS15 missing both hydrogens!
Amy2qv4:A:HIS101 missing both hydrogens!
Amy2qv4:A:HIS185 missing both hydrogens!
Amy2qv4:A:HIS201 missing both hydrogens!
Amy2qv4:A:HIS215 missing both hydrogens!
Amy2qv4:A:HIS299 missing both hydrogens!
Amy2qv4:A:HIS305 missing both hydrogens!
Amy2qv4:A:HIS331 missing both hydrogens!
Amy2qv4:A:HIS386 missing both hydrogens!
Amy2qv4:A:HIS476 missing both hydrogens!
Amy2qv4:A:HIS491 missing both hydrogens!
polar hydrogens missing from n-terminus of chain A
adding gasteiger charges to Amy2qv4
ERROR *********************************************
Traceback (most recent call last):
File "/home/ramachandran/Desktop/Autodoc-trial-18.05.22/ADT/mgltools_x86_64Linux2_1.5.6/MGLToolsPckgs/ViewerFramework/VF.py", line 898, in tryto
result = command( *args, **kw )
File "/home/ramachandran/Desktop/Autodoc-trial-18.05.22/ADT/mgltools_x86_64Linux2_1.5.6/MGLToolsPckgs/AutoDockTools/autostartCommands.py", line 964, in doit
ps = subprocess.Popen(args)
File "/home/ramachandran/Desktop/Autodoc-trial-18.05.22/ADT/mgltools_x86_64Linux2_1.5.6/lib/python2.5/subprocess.py", line 594, in __init__
errread, errwrite)
File "/home/ramachandran/Desktop/Autodoc-trial-18.05.22/ADT/mgltools_x86_64Linux2_1.5.6/lib/python2.5/subprocess.py", line 1097, in _execute_child
raise child_exception
OSError: [Errno 13] Permission denied
Thanks
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