Anybody knows any script for contrasts by combination of levels for PERMANOVA in R?

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Riegardt Johnson

Hi Alexandre,

What type of data are you trying to analyse?

I have analysed environmental data by groups and the script I use looks like follows:

adonis(env~type+biotope, env, perm=9999, method="euclidean")

where type is a list of 5 different environments and biotope is a list of sub-classifications within those environments.

Alexandre Santos

Thank you for your answer Riegardt Johnson, Do you make pairwise comparison between environments and biotope? If yes, please send me your script, my dataset is similar of yours,

Best wishes,