Hi everyone

I'm currently working with a membrane transporter protein to which I need to simulate molecular dynamics (MD). For this, I have inserted my protein in a membrane with CHARMM-GUI and preparing the system with Amber. My problem is that Amber's tutorial to perform MD to this type of proteins only specifically details the process with a membrane without proteins (http://ambermd.org/tutorials/advanced/tutorial16/index.html) and talks very little about what I need to do.

For that reason, will anyone have a tutorial available to do MD for membrane-bound proteins in Amber?

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