I don't think mechanically homogenisation will be succesful so I am especially interested in enzimes and/or lysis buffers which do not interfere with RNA extraction protocol via RNeasy Mini Kit. Many thanks in advance!
Frequent failures of RNA isolation of any single cell suspension or tissues from any sources may be caused by improper sterile technique, incomplete breakage, and presence of RNases released from the tissues, contamination from the surrounding including the experimenter during cell lysis process.
- Wash your cells in DEPC-treated PBS three times, and make hard cell pellets in aliquoted E-tubes at 5,000rpm for 10 min in the last wash.
- Snap freeze the E-tubes by submerging into LN2 gas.
-Transfer the cell pellets via sterile hypodermic needle into a DEPC-treated, pestle and mortar that are previously stored at -80C overnight.
- Grind several cell pellets together while pouring some LN2 gas over them to make cell powder finely.
- Then follow the normal total RNA isolation procedure accordingly.
It seems that mechanical pre-homogenisation with 21G needles followed by QIAshredder homogenization with the addition of RLT lysis buffer and 2-mercaptoethanol provide adequate RNA concentration after extraction with RNeasy Mini Kit.