I am using Popart for creating haplotypes. I have 48 sequences for ten locations and I have a nexus file which has the taxlabels, character matrix. When I upload only this file, I have no issue with popart software. However when i add the traits data in to nexus file by opening it in notepad and then use it , popART don't show the traits instead it only shows the alignments as before adding the Trait blocks to nexus file. Anyone can help in finding the error? Thanks

I am following the procedure as describe at http://popart.otago.ac.nz/examplenex.shtml and explained by some researchers Engy T. Megahed and Kunal Arekar

https://www.researchgate.net/post/Does_anyone_know_how_to_use_the_traits_block_in_PopArt_to_add_color_to_a_haplotype_network

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