can anybody help in performing docking of metal ion and thn further virtual screening for new ligands, i m missing some basic knowledge about it.
plz reply me so tht i can proceed further.....(specifically for autodock)
I need to knw how to prepare protein for docking and what is importance of non polar hydrogen in protein, how to select pockets of protein for docking
thnx radu ji.... i m pretty much acquainted with these forums.... but what i need to know is ........i have read some articles in which they used some reference structure... i m also having some ref stru. but how to use htose in utodock ... i dont know... second thing is that how shd i be sure tht whatever binding energy is written in dlg files of autodock are upto the mark or nott..
i will appreciate ur help....
thnx....
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