Hi all, basically this is a bioinformatics query, I have a 1000genome phase3 vcf file and a clinical bed file, i need to map the bed file against my vcf file to find only CNVs, but not indels, for that I wrote a perl code to extract only CNVs from 1000g vcf file and now I need to map these bed file against vcf file, kindly suggest some methods and tools. Thank you all

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