Our lab uses a histopaque density gradient to isolate the PBMCs from whole blood. Once the cells have been isolated and are ready to be washed, I have noticed that our cells adhere very strongly to the bottom of the tube. I cannot flick the bottom of the tube to remove the PBMCs. Typically, I have to use a disposable pipette to gently resuspend the cells; however, I am worried that I am lysing the cells thus lowering their viability.
Does anyone have any suggestions as to why this may be occuring?
Also, we typically assess viability using a 1:1 trypan blue stain with the Countess II. We have noticed that our viability is not very high and is often variable. Other labs in our department use the PBMC isolation tubes and achieve similar viability when using the same protocol (i.e., 1:1 trypan), so this leads me to believe that it is not our protocol. The viability is also >90% when counting with a hemocytometer.
Has anyone had success counting using the Countess II and a trypan blue stain?