Which software is used for the analysis of DNA structure?

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Abhishek Saxena

Please clarify what you mean by "instruction of structure". If you want to dock DNA with ligands then Autodock can be used.

http://www.ncbi.nlm.nih.gov/pubmed/19655805

Also you can try 3D-DART software by HADDOCK

http://haddock.science.uu.nl/dna/dna.php

Also have a look at the SCFbio page from Indian Institute of Technology, New Delhi, India

http://www.scfbio-iitd.res.in/dock/dnadock.jsp

Afsane Heidari

Thanks Saxena for your answer. For example "Nano tube modeler" gives structure of nano-tube and we can optimize it by Gaussian. I look for a same software that gives structure of a arbitrary piece of DNA. Then we optimize it.

Danish Jasnaik

Hi,

http://nar.oxfordjournals.org/content/31/17/5108.full (http://x3dna.org/)

http://www.dnastar.com/

http://www.bluetractorsoftware.co.uk/

Hope this helps.

Regards