Dear researchers
I did docking analysis of some phytochemicals against spike protein of novel corona virus 2019 using AutoDock 4.2. I want to perform molecular dynamics simulation of the docked poses with the lowest negative binding energy using Vega ZZ software and create an RMSD graphic. However, I cannot decide which of the file extensions I get with AutoDock to use in molecular dynamics.
I will be very happy if you could immediately enlighten me about this problem.
Best regards