What tool can I use for creating a Quantative Trait Loci map from SSR data?

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Shamsunnahar Mukta

I used MAPMAKER , R/qtl mapping tool. But make sure you checked your binary file, input method, and factors behind the settings.

Vinay Kumar

Mapmaker or QTL Cartographer can be used

Kleomenis Kalogeropoulos

Mapmaker will do the job!

Michael Paulsmeyer

R/qtl is an amazing tool for mapping SSR data. Highly recommend https://rqtl.org/tutorials/

Khaled A M Khaled

Thanks for all replays, I appreciated your help

Thanks again