I am performing bi-layer well diffusion antibacterial assay of plant extracts. At the bottom of the plate, I pour hard agar media ( nutrient broth + 1.5% agar). Then, I mix bacteria from broth culture with soft agar media ( nutrient broth + 0.8% agar) and pour it on top. In the soft agar, I make well where I load the sample. But only when using gram-negative bacteria, I get this kind of bubbles (apparently) in the media. There has been no problem with bacterial growth. The same thing happened with the TSB media.

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