Hi,
I'm trying to collect experiences and opinions on what the most ergonomic software people have used to manually draw 3D ROIs on structural MRIs are. We are considering MRIcro, ITK-SNAP...I see it is also possible in AFNI.
Many thanks in advance for any comments, comparisons and experiences you can share!
I am familiar with these packages as I have been using them (and others) for 15 years. In my experience, Analyze is the best although it is not free... For free packages, I have found mrview (part of the MRtrix3 package) excellent for manually drawing 3D ROIs. DISPLAY is also great, as is fslview (part of the FSL package), although all of the ones you have mentioned are also useful. Every has their own preference, so I suggest you try a few of them to work out which you are most comfortable with.one
Jerome
Hi,
I use fslview and MRtrix3 to manually draw a 3D ROI. You can also use MRIcron if you want create a ROI from an atlas (for example Broadman atlas).
- Badges
- Science topic
- Similar topics
- Engineering
- Materials Engineering
- Powders