I have an oligo where Fmoc group is present as a protection group in modified oligo which is water soluble only. What method can I use for Fmoc deprotection in water ?
I have read many papers in which deprotection using 25 % piperidine /DMF, have been reported... haven't seen other reports in water. However, since DMF is miscible in water, you can try a water solution of your oligo in DMF.