Hi everyone,

We use the synthego ICE or TIDE online platforms for Sanger sequencing analysis for our CRISPR-edited cells with no problem. We also do amplicon deep sequencing (more than 50k read per sample and 2x250bp reads) and want to do HDR and INDEL analysis. We used Cas-analyzer and CRISPResso2 for these analyses but I wonder whether you have some other recommendations.

Note; With CRISPResso2 analysis, we always have some levels of ambiguous reads. Does anyone know how to interpret this fraction?

Thank you,

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