What is the best reference genome for each of the isolates? Burkholderia cepacia ,Klebsiella pneumoniae?

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Phil Geis

perhaps use types: ATCC's 25416 and 13883 respectively.

Marwan Mahmood Saleh

thanks

Is this accession number for reference genome? Phil Geis

Those are culture collection designations of type strains.

These are "type" strains - the specific isolates that define the species.

ATCC offers link to 25416 genome https://genomes.atcc.org/genomes/fdb6ee7d7a1c4ffc?_ga=2.179345761.413019455.1620039199-715791063.1619788701

and 13883

https://genomes.atcc.org/genomes/a774402126dd4b5c?_ga=2.149280115.413019455.1620039199-715791063.1619788701

Thank you Phil Geis

Shabarinath Srikumar

For K. pneumoniae you can use MGH78578