We are planning to do RNA-Seq for RNA extracted from two types of samples:
We only need gene expression profiling, not any deeper data. We are considering Lexogen Quantseq and Qiagen UPX sequencing. UPX is cheaper but not sure if it has been applied for this type of samples. Are there other methods worth considering?
Frederic Lepretre
Hi Mikael,
it's not the same thing since it will give you less informations than RNAseq but since RNAseq requires more bioinformatics capacities, I would recommend arrays as Agilent or Affymetrix. other are possible but both will give you some transcriptomics approaches.
fred
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Amit V Pandey
Informatics analysis would be the limiting factor. If you are going with commercial sequencing, make sure it is included.
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