Apart from the Ramachandran plot, what are the various ways of validating the structure of a modeled protein? What are the parameters one need to consider when validating a modeled protein structure.
Errat, Verify3D, Procheck. If you have the template structure you can check the superimpose RMSD by using the PyMol.
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Hi, what should we do if the predicted structure for our protein design does not pass the PROCHECK assessment?
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