Hello, I encountered several unsolvable problems in the invasion experiment:
After the matrix gel was plated, the liquid surface was uneven and bubbles always appeared;
After crystal violet staining, the cells were unevenly distributed, with some fields of view dense and some sparse;
There were too few cells in the lower layer of the Transwell chamber, resulting in a migration/invasion efficiency significantly lower than expected (cell viability and treatment factors have been excluded).
I would like to ask:
How to avoid bubbles and uneven liquid surface when plating matrix gel? Is it necessary to have specific pretreatment (such as precooling/preheating) or operation skills?
After crystal violet staining, the cells were unevenly distributed. Could it be related to the cell seeding density and staining and washing steps? Is there any optimization plan?
In the Transwell experiment, there were too few cells in the lower layer. In addition to the cell status, do we need to pay attention to the pretreatment of the chamber membrane (such as Matrigel concentration, hydration time) or culture conditions?
[Troubleshooting Questions are selected from MCE customer consultation emails.]
When spreading the gel, keep the pipette vertical to the top of the inner hole of the 96-well plate to avoid the matrix gel from contacting the wall of the hole;
If bubbles appear, immediately touch the surface of the bubble with the pipette tip to puncture it, and then gently shake the plate to spread the matrix gel evenly on the bottom of the well.
Adjustment of liquid surface flatness:
If the bottom of the matrix gel plate is uneven, you can promote uniform distribution by gently shaking the plate horizontally (or using a shaker).
2. Potential causes of abnormal cell distribution in Transwell chambers.
Operational factors:
The Transwell chamber is placed in the well plate at an angle;
Insufficient cell digestion leads to agglomeration and uneven suspension inoculation;
The matrix gel surface is uneven or there are bubbles.
Experimental design factors:
The cell's own invasion ability is weak;
The Matrigel concentration is too high or the thickness of the gel is too thick, which hinders cell migration;
The cell seeding density is insufficient, or the pore size of the Transwell chamber membrane is too small (such as