Hello, I am trying to determine if a region present in a Streptomyces genome acts as a ncRNA that affects gene expression. Which are the best tools to analyze sequences for this?
Hi, you could have a look at RFAM if there is already some annotation for your region present or even search the region against the RFAM database using cmsearch. Alternatively, you could search for homologs in other organisms using GLASSgo (http://rna.informatik.uni-freiburg.de/GLASSgo/)