As i am comparing many proteins sequences, I have chosen hydropathy plots as a criteria to compare hydrophobic to hydrophilic amino acids in each protein. Should it be possible to by the software to over lap all the sequences in to one plot?
You can use program available in Expasy tools (free online)
Or for hydropathy plots at the membrane interface you can use : the program MPEX available online at: blanco.biomol.uci.edu/mpex/
Thanks alot, Stefania,
I have chosen to use expasy tool (http://web.expasy.org/protscale/), I am having few glitches, as I would want to use hydropathy plots as a mode of comparison of 7 different proteins sequence composition, which i plan to do so by overlapping the plots of 7 proteins in different colors, I did try it in expasy, but i am able to get one plot at a time.
So is it possible for me to upload 7 different sequences at once to get 7 plots in the same graph.
Kindly advice.
I usually use MPEX for getting graphs. But I imagine that also from expasy you can get the data points and make a superimposed graph with Excell. Hope it is usefull. Stefania
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