I'm trying to create compound-target-pathway (C-T-P) network in cytoscape. I started with two excel sheets (please see attached). First sheet has compounds and associated targets and the second sheets has targets and associated pathways. I then import them into cytoscape as a network before merging them both. Now the issue is, how do I change the shape and colour of nodes so that compound nodes, target nodes and pathway nodes are of different colour/shape? I can do this inidividually but it would take so much longer if I had more pathways or compounds. And more importantly, is there a way to change the size of the target nodes depending on how many interactions they have? As in, I would like the target/genes that are connected to multiple pathways and compounds to be bigger than those only connected to a few. I tried to do the normal analyse network method and then change size based on degree, but this then changes the size of all nodes, include compound and pathways. I would really appreciate if someone can help me with this.