I am looking for a publicly available data set comprising raw sequencing data from multi gene panels (.bam or .fastq) and corresponding CNV analysis, either via Array-CGH or MLPA. The data is intended to serve for the evaluation of CNV detection approaches on targeted sequencing data.
Useful hints are highly appreciated.
Shaikh Mohammed Inayat
Hello Corinna,
TCGA data portal is the best resource for raw sequencing data. But this no longer operational, all TCGA data is now accessible at Genomic Data Commons (https://gdc.nci.nih.gov/)
for many other resources may be this will help
https://www.biostars.org/p/15563/
https://gdc.nci.nih.gov/
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