What should be the minimum RNAfold energy of 49 base RNA sequence to filter out the stable non-coding RNA?

We are having 49 base RNA sequences and want to filter out the stable RNA sequances.For that we performed RNA folding through RNAfold tool as a result we got the minimum folding energy(MFE) for...

02 March 2016 4,953 4 View

How to evaluate the counter maps generated g_mdmat in gromacs ?

07 August 2014 7,905 4 View

How can I increase the workspace of R in Linux RedHat 6?

I am running a genome data which contains the 1200 Column and 5 lac Rows in a Matrix form for classification via random forest. Software is able to read the data in x matrix and transpose of this...

06 July 2014 3,402 5 View

Protein-Peptide interaction stability study through Molecular dynamics simulation ?

I have modeled 7 peptides and performed docking in a the catalytic domain of the protein. Our prime object of this study is to identify the catalytic domain residues via known peptide inhibitors....

03 April 2014 1,411 4 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

flexibility of polymers chain

effect of double bond on the flexibility of polymers

07 April 2021 0 0 View