Saurabh Gupta

5 Questions 18 Answers 0 Followers

Questions related from Saurabh Gupta

What should be the minimum RNAfold energy of 49 base RNA sequence to filter out the stable non-coding RNA?

We are having 49 base RNA sequences and want to filter out the stable RNA sequances.For that we performed RNA folding through RNAfold tool as a result we got the minimum folding energy(MFE) for...

03 March 2016 4,991 4 View

How to evaluate the counter maps generated g_mdmat in gromacs ?

I performed the trajectory analysis of my protein in different time intervals using g_mdmat program of gromacs. From user manual I came to know this program is use to Identify the spinning motion...

08 August 2014 7,949 4 View

How can I increase the workspace of R in Linux RedHat 6?

I am running a genome data which contains the 1200 Column and 5 lac Rows in a Matrix form for classification via random forest. Software is able to read the data in x matrix and transpose of this...

07 July 2014 3,441 5 View

Protein-Peptide interaction stability study through Molecular dynamics simulation ?

I have modeled 7 peptides and performed docking in a the catalytic domain of the protein. Our prime object of this study is to identify the catalytic domain residues via known peptide inhibitors....

04 April 2014 1,448 4 View

Protocol for finding the SNP from a reference genome Using GATK Tool ?

Please tell me the running program and command for finding of SNP from a genome using GATK tool.

04 April 2013 4,387 3 View