I designed a kanamycin resistance cassette (up-kan-down, about 3 kb) and want to knock out the EPS operon in B subtilis. I didn't get any transformants on kanamycin plates (10 ug/ml kan), while GFP plasmid as positive control was successful knocked into the same prepared bacteria at amyE locus with Spectinomycin as marker. I have no idea where the problems are.

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