I cloned a protein (histone methyltransferase prSET7) in a vector containing tetR-EYFP at the N-terminal, since the catalytic domain of my protein is in the C-terminal, therefore having a tetR-EYFP-prSET7 fusion protein. After checking that the sequence is OK, I transfected it and checked the functionality of it in recruiting the methylation marker H4K20me1 by IF (compared with a control, I should be able to see an increased mark for this protein). I cloned this protein in a vector containing a different tag (tetR-TOMATO) and the result was the same after transfection+IF. I don't know if this protein might have lost its function after fusing it with EYFP/TOMATO genes. Anyone have any similar problems? Any suggestions or modifications that I should take into account for cloning this protein?