Hi every one,

I am a little familiar with running QIIME2 and have done this many times but now I am finding it difficult to run alpha and beta diversity analysis and getting error

Plugin error from diversity:

The table does not appear to be completely represented by the phylogeny.

Debug info has been saved to /tmp/qiime2-q2cli-err-olkozq2z.log

use the commands below

qiime diversity core-metrics-phylogenetic \

--i-phylogeny rooted-tree.qza \

--i-table sample-contingency-filtered-table.qza \

--p-sampling-depth 1103 \

--m-metadata-file sample-metadata.tsv \

--output-dir core-metrics-results

Thank you in advance

Best Wishes

Khalid