The universal 16S rRNA gene and universal 16S rRNA primers are admittedly used to identify both bacteria and archaea domains at the same time. I would like to learn more about its feature, and compare bacterial and archaeal 16S rRNA genes each other as well as their application in molecular level. It is actually required papers or book to reach my answer.
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Some links to start with
https://www.ncbi.nlm.nih.gov/m/pubmed/16333109/
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073058/
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001920
https://www.sciencedirect.com/science/article/abs/pii/S0043135415302542
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3592464/
http://lutzonilab.org/16s-ribosomal-dna/
https://www.biorxiv.org/content/biorxiv/early/2017/06/06/146738.full.pdf
https://academic.oup.com/dnaresearch/article/21/2/217/404545
https://www.frontiersin.org/articles/10.3389/fmicb.2015.00771/full
https://www.jstor.org/stable/41489023?seq=1#page_scan_tab_contents
You can find more information in the following article:
https://www.sciencedirect.com/science/article/abs/pii/S0043135415302542
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