I have a script for docking single ligand using AutoDock and searching for multiple ligands.
Thank you Muniba for the response. I am asking for AutoDock and not for Vina.
Try to use iGEMDOCK for docking multiple ligands. It is easy to use with minimal efforts required.
Thank you Deepti Mittal
I would like to calculate the gear wheel and gear tooth deformation due to rotational speed? The gear shaft is mounted on hydrodynamic bearings. What are the boundary conditions need to apply?...
21 May 2024 8,067 0 View
at the endpoint of the watershed. The Gaging point is not there.
06 February 2024 2,678 2 View
I would like to set the emissivity of the infrared thermometer to measure the temperature. What is the emissivity of the material 17CrNiMo6 at 50 deg C to 150 deg C?
29 September 2023 5,879 0 View
Dear Researchers, I am currently seeking information on estimating Resistivity and Seebeck coefficient for high entropy alloys. While I have come across equations for binary alloy systems, but...
27 June 2023 7,978 2 View
I would like to simulate the heat generation in helical gears. I need to calculate friction coefficient, contact stress and sliding velocity. How to calculate friction coefficient?
01 June 2023 8,524 0 View
Heat is generated in the helical gears due to sliding friction. Helical gears are oil-jet lubricated and cooled to reduce the gears temperature due to heat generation. I would like to estimate the...
30 May 2023 5,927 0 View
How to calculate gearbox power loss? Example: A 30 MW gearbox, the helical gear pair mounted on journal bearing. It is rotating at high speeds (greater than 120 m/s). power losses are mesh power...
16 May 2023 4,643 2 View
We did a virtual screening of database using autodock vina. We started ranking the molecules based on docking score and observed three molecules of different chemical structure with same docking...
15 May 2023 7,436 4 View
Are there any methods available to measure gear teeth temperature? What are the instruments/sensors used to measure it? Any simple methods (contact and non-contact type) available to measure gear...
16 April 2023 3,465 0 View
How to select minimum clearance for hydrodynamic journal bearings, especially offset and elliptical bearings?
31 March 2023 3,458 0 View
Could you recommend some articles on Urban Transportation System optimization and Innovation?
13 August 2024 2,595 3 View
I attempted to make a privately uploaded text public but a window appeared that said an error occurred. There was no explanation provided as to why there was an error or what might be done to...
05 August 2024 8,025 7 View
why don't d-orbitals split themselves because of themselves without the presence of ligands? Electrons are indistinguishable. Why wouldn't it be more correct that protons from a ligand split the...
03 August 2024 3,589 3 View
I'm guessing it's because the ligand experiences too much electron repulsion or proton repulsion from the chromium to insert them close to the 3d-orbitals which are close to the metal nucleus. Is...
03 August 2024 1,370 1 View
Molecular docking software/ websites?
02 August 2024 8,704 7 View
Hello everyone What is your opinion about the introduction of an expert decision support system in which the rules are extracted from existing data without human intervention, instead of being...
31 July 2024 5,785 4 View
Hello,, The metal complex ligand appears incomplete in the screen of the discovery studio visualizer
30 July 2024 3,354 1 View
When I run autogrid4 it says: autogrid4: ERROR: Unknown receptor type: "Cr" -- Add parameters for it to the parameter library first! Look forward to your reply.Thank you so much!
29 July 2024 488 0 View
DOS version.
29 July 2024 6,064 1 View
After a lot of feature engineering for click-through rate modeling, it feels like it's basically the end of iteration? I mean, it's not cost-effective to keep doing it?
29 July 2024 4,955 0 View