Platforms for sequence processing?

Wosene Gebreselassie Abtew @Wosene-Gebreselassie-Abtew

07 March 2023 0 3K Report

Which free platforms are available other than TASSEL to process DNA raw GBS sequence data (Quality check of raw sequence, barcode splitting, pre-processing, alignment to reference genome and SNP calling)?

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Science method

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

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Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence?

I am on the lookout for the Enhanced Yellow Fluorescent Protein (Aequorea victoria) DNA sequence. Does anyone know where I can find it? Thank you in advance

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What's the best way to measure growth rates in House sparrow chicks from day 2 to day 10?

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How to increase a model accuracy ?

dear community, my model is based feature extraction from non stationary signals using discrete Wavelet Transform and then using statistical features then machine learning classifiers in order to...

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1. What is the impact of having different scales in a survey? and how can we solve this problem before and after data collection (Literature)?

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03 March 2021 2,870 3 View

What degree of missing data in a particular case/participant results in Expectation-Maximisation no longer working?

I'm dealing with a mediation model and am using the PROCESS module in SPSS. Due to SPSS and PROCESS being limited in the imputation methods - being unable to handle multiple imputation - the other...

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Can NFL theorem be valid in infinite search space in ML?

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Does anyone know how to plot my station to a section plot on Ocean Data View (ODV)?

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01 March 2021 3,610 1 View

How to address this issue in the analysis of Real-Time PCR results?

To dear Researchers, I was analyzing a series of concentration for estimation of Real-Time PCR efficiency. The concentration was 1:10. I used MS-excel to evaluate Slope. The result of slope was -8...

01 March 2021 8,683 4 View

Is it possible for two human neuronal cell lines to have different gene sequence for the same protein?

I am looking at the ATP1A2 (Sodium/Potassium ATPase alpha subunit 2) in two human neuronal cell lines. Expression levels of this protein seems to be almost equal when detected by one antibody....

01 March 2021 3,607 3 View