I want to insert a designed self-amplifying mRNA vaccine construct [containing (i) genes encoding non-structural proteins (i.e., nsP1-4) of an alphavirus and (ii) genes encoding targeted epitopes] into pGEM®-11Zf(+) plasmid for an in vitro transaction approach. But here, I don't know where and how exactly I can insert my construct? This plasmid is efficient for in vitro RNA synthesis but it has two promoters (i) T7 as 5' to 3' and (ii) SP6 as 3' to 5'.
Besides, I need to know, the promoter, for example, T7 promoter should be upstream the non-structural proteins of the self-amplifying mRNA vaccine or upstream the targeted epitopes?
Many thanks