By selecting the initial ensemble, the model noise and the measurement perturbations wisely, it is possible to achieve a significant improvement in the EnKF results, using the same number of members in the ensemble. The results are also compared with a square root implementation of the EnKF analysis scheme where the analyzed ensemble is computed without the perturbation of measurements. It is shown that the measurement perturbations introduce sampling errors which can be reduced using improved sampling schemes in the standard EnKF or fully eliminated when the square root analysis algorithm is used. Further, a new computationally efficient square root algorithm is proposed which allows for the use of a low-rank representation of the measurement error covariance matrix. It is shown that this algorithm in fact solves the full problem at a low cost without introducing any new approximations.

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