I want to deliver viral vector to layer 2/3 in mouse cortex. What is the DV coordinate recommended and where the depth count start from ? is it the skull surface itself or the cortex surface?
Thanks a lot but do u start reset the stereotactic from the skull surface or when u about to touch the cortex itself? Have u tried viral vecto delivery L2-3?
You should reset it from the cortical surface of dura when it is still intact. For layer 2/3 specific expression either you need to inject a very low amount very slowly like 100-200nl over 3-5min at around 150µm. Or you go angular around 60-70° and inject a similar volume around 150-250µm depending how much of an angle you use. I personally only have experience with AAV2.
An excellent reference for all your aav serotype and spreadability questions is this one Article Analysis of Transduction Efficiency, Tropism and Axonal Tran...
I used aav2 and got between 400µm to a milimeter approximately depending on the angle and the volume injected.