I want to analyze ligand-protein interaction (3D) with bioinformatics tools, please give recommendation about reliable software or web service.
Thanks.
https://en.wikipedia.org/wiki/List_of_protein-ligand_docking_software
For docking, check out the docking softwares given in the below attached link
https://www.click2drug.org/directory_Docking.html
https://www.science.co.il/biomedical/software/Protein-ligand.php
For protein-ligand interaction, you can you Discovery studio visualizer, Ligplot,
Protein-Ligand Interaction Profiler (PLIP).
1. Free academic molecular docking software：
AutoDoc (khttp://autodock.scripps.edu/)
rDock (http://rdock.sourceforge.net/)
UCSF DOCK (http://dock.compbio.ucsf.edu/)
2. Commercial Software:
Glide (https://www.schrodinger.com/glide)
GOLD (https://www.ccdc.cam.ac.uk/solutions/csd-discovery/components/gold/)
MOE (https://www.chemcomp.com/MOE-Structure_Based_Design.htm)
Surflex-Dock (http://www.jainlab.org/)
FlexX (https://www.biosolveit.de/FlexX/)
If you need technical support, and I know that Creative Biostructure may have related services. I have worked with them before, I feel good, you can try.
Hope it helps!
Hello
You can use Chemira, CASTp, Autodock vina and BIOVIA Discovery Studio.
Good Luck.
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