I want to analyze ligand-protein interaction (3D) with bioinformatics tools, please give recommendation about reliable software or web service.
Thanks.
https://en.wikipedia.org/wiki/List_of_protein-ligand_docking_software
For docking, check out the docking softwares given in the below attached link
https://www.click2drug.org/directory_Docking.html
https://www.science.co.il/biomedical/software/Protein-ligand.php
For protein-ligand interaction, you can you Discovery studio visualizer, Ligplot,
Protein-Ligand Interaction Profiler (PLIP).
Thanks for all
1. Free academic molecular docking software:
AutoDoc (khttp://autodock.scripps.edu/)
rDock (http://rdock.sourceforge.net/)
UCSF DOCK (http://dock.compbio.ucsf.edu/)
2. Commercial Software:
Glide (https://www.schrodinger.com/glide)
GOLD (https://www.ccdc.cam.ac.uk/solutions/csd-discovery/components/gold/)
MOE (https://www.chemcomp.com/MOE-Structure_Based_Design.htm)
Surflex-Dock (http://www.jainlab.org/)
FlexX (https://www.biosolveit.de/FlexX/)
If you need technical support, and I know that Creative Biostructure may have related services. I have worked with them before, I feel good, you can try.
Hope it helps!
Hello
You can use Chemira, CASTp, Autodock vina and BIOVIA Discovery Studio.
Good Luck.
Can anyone help me to find out about online server to analyzing Molecular Dynamic Simulations, because I am know only offline tools such GROMACS, Yassara, MOE, etc. Thanks.
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