I downloaded my pdb file from RCSB. Cuz I want to use amber tleap, I used pdb4amber to convert the PDB file. Then the error occurred:
GLU_29 misses 4 heavy atom(s)
ARG_102 misses 6 heavy atom(s)
GLU_242 misses 4 heavy atom(s)
ARG_243 misses 6 heavy atom(s)
I then checked my pdb file downloaded from RCSB. These residues do miss some heavy atoms. What should I do then to add the missed atoms. I know what atoms missed, but just do not know how to add them.
Hope I could get your help! Thank you very much!